Schema for TSS Annotations - Transcription Start Sites Identified by modENCODE

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Schema for TSS Annotations - Transcription Start Sites Identified by modENCODE

Database: dm3gene Primary Table: annotated_tss Row Count: 4

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	contig1	`varchar(255)`	values
`chromStart`	5576	`int(10) unsigned`	range
`chromEnd`	5577	`int(10) unsigned`	range
`name`	TSS_CG32165_16588424	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	contig1	5576	5577	TSS_CG32165_16588424
585	contig1	5806	5807	TSS_spd-2_16588194
585	contig1	9784	9785	TSS_tra_16584216
585	contig1	9850	9851	TSS_tra_16584150

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TSS Annotations (annotated_tss) Track Description


	Description This track shows the transcription start sites identified by the modENCODE Drosophila Transcriptome group. Locations included in this list were either verified experimentally with CAGE signal or a full length cDNA. Credits The modENCODE Drosophila Transcriptome datasets are available for download from the modENCODE FTP site References Hoskins RA, et al. Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Res. 2011 Feb;21(2):182-92.