Schema for RNA-Seq Coverage - RNA-Seq Read Coverage

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Database: dm3gene Primary Table: adult_females_rep1 Row Count: 1

field	example	SQL type	info
`fileName`	/gbdb/dm3gene/bbi/GSM694258...	`varchar(255)`	values

This table points to a file in BigWig format.

Sample Rows

fileName
/gbdb/dm3gene/bbi/GSM694258_R54s1_Dmel_yw_F_R1_selected.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA-Seq Coverage (rnaseq_coverage) Track Description


	Description This track shows the number of RNA-Seq reads from each sample that have been mapped to the D. melanogaster contigs. Credits The modENCODE RNA-Seq datasets are available for download from the NCBI Gene Expression Omnibus (GEO) database under the accession numbers GSM694258 and GSM694260. References Graveley BR. et al. The developmental transcriptome of Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):473-9.

Description