Schema for RNA PolII X-ChIP-Seq - RNA PolII X-ChIP-Seq for Drosophila S2 Cells

Database: dm6 Primary Table: GSE67454_polII_macs Row Count: 7,525 Data last updated: 2021-09-01

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	18366	`int(10) unsigned`	range
`chromEnd`	18468	`int(10) unsigned`	range
`name`	GSE67454_SRR1947849_macs_pe...	`varchar(255)`	values
`score`	30	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.231	`float`	range
`pValue`	5.32686	`float`	range
`qValue`	3.09442	`float`	range
`peak`	37	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	18366	18468	GSE67454_SRR1947849_macs_peak_1	30	.	2.231	5.32686	3.09442	37
585	chr2L	21213	21333	GSE67454_SRR1947849_macs_peak_2	32	.	2.34604	5.44852	3.2011	39
585	chr2L	67067	67271	GSE67454_SRR1947849_macs_peak_3	80	.	3.17671	10.8605	8.02203	73
585	chr2L	72600	72839	GSE67454_SRR1947849_macs_peak_4a	123	.	3.40332	15.524	12.3376	49
585	chr2L	72600	72839	GSE67454_SRR1947849_macs_peak_4b	43	.	2.37929	6.7402	4.31466	182
585	chr2L	72884	73015	GSE67454_SRR1947849_macs_peak_5	43	.	2.39262	6.80568	4.37368	41
585	chr2L	108080	108343	GSE67454_SRR1947849_macs_peak_6a	144	.	3.37447	17.832	14.4709	93
585	chr2L	108080	108343	GSE67454_SRR1947849_macs_peak_6b	62	.	2.50772	8.92479	6.26126	216
585	chr2L	120548	120664	GSE67454_SRR1947849_macs_peak_7	70	.	2.45177	9.80768	7.06551	59
585	chr2L	129024	129237	GSE67454_SRR1947849_macs_peak_8	149	.	3.12211	18.2854	14.9007	155

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII X-ChIP-Seq (GSE67454_XChIPSeq) Track Description


	Description These tracks show the regions that are enriched in RNA Polymerase II (Rpb3) as identified by the crosslinking ChIP-seq protocol (X-ChIP-Seq). The peak calls and the log likelihood ratios were determined by MACS2. The dataset was retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSM1647362. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly. Credits Skene PJ, Henikoff S. A simple method for generating high-resolution maps of genome-wide protein binding. Elife. 2015 Jun 16;4:e09225. Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description