Schema for LAD (R5) - Lamina Associated Domains (LADs) in Kc Cells (R5)

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Schema for LAD (R5) - Lamina Associated Domains (LADs) in Kc Cells (R5)

Database: dm6 Primary Table: LADs_Kc Row Count: 412

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	59117	`int(10) unsigned`	range
`chromEnd`	90637	`int(10) unsigned`	range
`name`	LAD_0	`varchar(255)`	values
`score`	89	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	59117	90637	LAD_0	89	+
73	chr2L	307840	394800	LAD_1	94	+
73	chr2L	611133	803126	LAD_2	91	+
73	chr2L	906316	972000	LAD_3	72	+
74	chr2L	1514102	1604438	LAD_4	92	+
74	chr2L	1720839	1953900	LAD_5	77	+
602	chr2L	2241307	2358001	LAD_6	78	+
75	chr2L	2389840	2561704	LAD_7	79	+
75	chr2L	2609402	2696414	LAD_8	88	+
606	chr2L	2786723	2855134	LAD_9	90	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

LAD (R5) (LADs_Kc) Track Description


	Description This track shows the locations of the lamina-associated domains (LADs) based on DamID analysis of B-type lamin (Lam) in Drosophila Kc cells. The analysis results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly. Credits The locations of the lamina-associated domains were obtained from the Comparative modENCODE / ENCODE web site. References van Bemmel JG, et al. The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome. PLoS One. 2010 Nov 24;5(11):e15013. Ho JKW, et al. Comparative analysis of metazoan chromatin organization. Nature 512, 449-452 (28 August 2014).