Schema for InterProScan - InterPro Signatures Identified by InterProScan

Database: dm6 Primary Table: interproscan_Coils Data last updated: 2023-10-14
Big Bed File: /gbdb/dm6/bbi/interproscan/dm6_interproscan_Coils.bb
Item Count: 10,494
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15753193	Start position in chromosome
`chromEnd`	15753221	End position in chromosome
`name`	Coil	Name of item.
`score`	1000	Score (0-1000)
`strand`	+	+ or - for strand
`thickStart`	15753193	Start of where display should be thick (start codon)
`thickEnd`	15753221	End of where display should be thick (stop codon)
`reserved`	0	Used as itemRgb as of 2004-11-22
`blockCount`	1	Number of blocks
`blockSizes`	28,	Comma separated list of block sizes
`chromStarts`	0,	Start positions relative to chromStart

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	blockCount	blockSizes	chromStarts
chr2L	15753193	15753221	Coil	1000	+	15753193	15753221	1	28,	0,
chr2L	15784327	15784355	Coil	1000	+	15784327	15784355	1	28,	0,
chr2L	15854611	15854632	Coil	1000	+	15854611	15854632	1	21,	0,
chr2L	15854666	15854687	Coil	1000	+	15854666	15854687	1	21,	0,
chr2L	15854910	15854931	Coil	1000	+	15854910	15854931	1	21,	0,
chr2L	15854983	15855004	Coil	1000	+	15854983	15855004	1	21,	0,
chr2L	16005180	16005189	Coil	1000	+	16005180	16005189	1	9,	0,
chr2L	16232141	16232162	Coil	1000	+	16232141	16232162	1	21,	0,
chr2L	16278978	16279016	Coil	1000	-	16278978	16279016	1	38,	0,
chr2L	16279097	16279118	Coil	1000	-	16279097	16279118	1	21,	0,

InterProScan (interproscan) Track Description


	Description This track shows matches to protein signatures in the InterPro database that were identified by InterProScan. InterPro includes protein signatures from 14 member databases (see the "InterPro consortium member databases" page for details). InterProScan uses programs and analysis workflows optimized for each member database to perform the searches and filter the results. RefSeq protein sequences from the D. melanogaster genome were obtained from NCBI, and analyzed by InterProScan. The matches to the protein signatures were projected to the corresponding RefSeq transcripts and the genomic sequences using the pslMap program developed by the UCSC Genome Browser Project Team. References Paysan-Lafosse T, et al. InterPro in 2022. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. Jones P, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014 May 1;30(9):1236-40.

Description

References