Schema for InterProScan - InterPro Signatures Identified by InterProScan

Database: dm6 Primary Table: interproscan_PANTHER Data last updated: 2023-10-14
Big Bed File: /gbdb/dm6/bbi/interproscan/dm6_interproscan_PANTHER.bb
Item Count: 17,380
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15651590	Start position in chromosome
`chromEnd`	15679211	End position in chromosome
`name`	PTHR10166	Name of item.
`score`	1000	Score (0-1000)
`strand`	-	+ or - for strand
`thickStart`	15651590	Start of where display should be thick (start codon)
`thickEnd`	15679211	End of where display should be thick (stop codon)
`reserved`	0	Used as itemRgb as of 2004-11-22
`blockCount`	6	Number of blocks
`blockSizes`	171,282,474,111,82,84,	Comma separated list of block sizes
`chromStarts`	0,226,756,11993,21367,27537,	Start positions relative to chromStart

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	blockCount	blockSizes	chromStarts
chr2L	15651590	15679211	PTHR10166	1000	-	15651590	15679211	6	171,282,474,111,82,84,	0,226,756,11993,21367,27537,
chr2L	15651601	15679211	PTHR10166	1000	-	15651601	15679211	6	160,282,474,111,82,84,	0,215,745,11982,21356,27526,
chr2L	15730405	15730712	PTHR10177	1000	-	15730405	15730712	1	307,	0,
chr2L	15730619	15737722	PTHR10177	1000	-	15730619	15737722	2	217,95,	0,7008,
chr2L	15730625	15737728	PTHR10177	1000	-	15730625	15737728	2	211,101,	0,7002,
chr2L	15750811	15750972	PTHR21106	1000	-	15750811	15750972	1	161,	0,
chr2L	15752466	15753394	PTHR12131	1000	+	15752466	15753394	1	928,	0,
chr2L	15759301	15760456	PTHR43903	1000	-	15759301	15760456	4	59,429,133,55,	0,115,908,1100,
chr2L	15764386	15764853	PTHR13600	1000	+	15764386	15764853	2	235,71,	0,396,
chr2L	15764386	15764854	PTHR13600	1000	+	15764386	15764854	2	235,72,	0,396,

InterProScan (interproscan) Track Description


	Description This track shows matches to protein signatures in the InterPro database that were identified by InterProScan. InterPro includes protein signatures from 14 member databases (see the "InterPro consortium member databases" page for details). InterProScan uses programs and analysis workflows optimized for each member database to perform the searches and filter the results. RefSeq protein sequences from the D. melanogaster genome were obtained from NCBI, and analyzed by InterProScan. The matches to the protein signatures were projected to the corresponding RefSeq transcripts and the genomic sequences using the pslMap program developed by the UCSC Genome Browser Project Team. References Paysan-Lafosse T, et al. InterPro in 2022. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. Jones P, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014 May 1;30(9):1236-40.

Description

References