Schema for InterProScan - InterPro Signatures Identified by InterProScan

Database: dm6 Primary Table: interproscan_PIRSF Data last updated: 2023-10-14
Big Bed File: /gbdb/dm6/bbi/interproscan/dm6_interproscan_PIRSF.bb
Item Count: 1,427
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15752369	Start position in chromosome
`chromEnd`	15753411	End position in chromosome
`name`	PIRSF005198	Name of item.
`score`	1000	Score (0-1000)
`strand`	+	+ or - for strand
`thickStart`	15752369	Start of where display should be thick (start codon)
`thickEnd`	15753411	End of where display should be thick (stop codon)
`reserved`	0	Used as itemRgb as of 2004-11-22
`blockCount`	1	Number of blocks
`blockSizes`	1042,	Comma separated list of block sizes
`chromStarts`	0,	Start positions relative to chromStart

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	blockCount	blockSizes	chromStarts
chr2L	15752369	15753411	PIRSF005198	1000	+	15752369	15753411	1	1042,	0,
chr2L	15764375	15764866	PIRSF016305	1000	+	15764375	15764866	2	246,84,	0,407,
chr2L	15764375	15764868	PIRSF016305	1000	+	15764375	15764868	2	246,86,	0,407,
chr2L	15770149	15771064	PIRSF016570	1000	-	15770149	15771064	5	222,123,233,96,15,	0,281,459,747,900,
chr2L	16298962	16299261	PIRSF005355	1000	-	16298962	16299261	1	299,	0,
chr2L	16302410	16302773	PIRSF001788	1000	-	16302410	16302773	3	41,94,3,	0,107,360,
chr2L	16727076	16727658	PIRSF032184	1000	-	16727076	16727658	2	412,29,	0,553,
chr2L	16727084	16727658	PIRSF032184	1000	-	16727084	16727658	2	404,29,	0,545,
chr2L	16736816	16736901	PIRSF005719	1000	-	16736816	16736901	1	85,	0,
chr2L	16736920	16738192	PIRSF005719	1000	-	16736920	16738192	2	160,1051,	0,221,

InterProScan (interproscan) Track Description


	Description This track shows matches to protein signatures in the InterPro database that were identified by InterProScan. InterPro includes protein signatures from 14 member databases (see the "InterPro consortium member databases" page for details). InterProScan uses programs and analysis workflows optimized for each member database to perform the searches and filter the results. RefSeq protein sequences from the D. melanogaster genome were obtained from NCBI, and analyzed by InterProScan. The matches to the protein signatures were projected to the corresponding RefSeq transcripts and the genomic sequences using the pslMap program developed by the UCSC Genome Browser Project Team. References Paysan-Lafosse T, et al. InterPro in 2022. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. Jones P, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014 May 1;30(9):1236-40.

Description

References