Schema for InterProScan - InterPro Signatures Identified by InterProScan |
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Database: dm6 Primary Table: interproscan_PRINTS Data last updated: 2023-10-14
Big Bed File: /gbdb/dm6/bbi/interproscan/dm6_interproscan_PRINTS.bb
Item Count: 18,001
Format description: Browser Extensible Data
| field | example | description |
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| chrom | chr2L | Reference sequence chromosome or scaffold | | chromStart | 15772244 | Start position in chromosome | | chromEnd | 15772254 | End position in chromosome | | name | PR00180 | Name of item. | | score | 1000 | Score (0-1000) | | strand | - | + or - for strand | | thickStart | 15772244 | Start of where display should be thick (start codon) | | thickEnd | 15772254 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of blocks | | blockSizes | 10, | Comma separated list of block sizes | | chromStarts | 0, | Start positions relative to chromStart |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts |
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| chr2L | 15772244 | 15772254 | PR00180 | 1000 | - | 15772244 | 15772254 | 0 | 1 | 10, | 0, |
| chr2L | 15772267 | 15772287 | PR00180 | 1000 | - | 15772267 | 15772287 | 0 | 1 | 20, | 0, |
| chr2L | 15772480 | 15772503 | PR00180 | 1000 | - | 15772480 | 15772503 | 0 | 1 | 23, | 0, |
| chr2L | 15854929 | 15854946 | PR00511 | 1000 | + | 15854929 | 15854946 | 0 | 1 | 17, | 0, |
| chr2L | 15854948 | 15854969 | PR00511 | 1000 | + | 15854948 | 15854969 | 0 | 1 | 21, | 0, |
| chr2L | 15854971 | 15854988 | PR00511 | 1000 | + | 15854971 | 15854988 | 0 | 1 | 17, | 0, |
| chr2L | 15855002 | 15855015 | PR00511 | 1000 | + | 15855002 | 15855015 | 0 | 1 | 13, | 0, |
| chr2L | 15879686 | 15879699 | PR00756 | 1000 | - | 15879686 | 15879699 | 0 | 1 | 13, | 0, |
| chr2L | 15879702 | 15879718 | PR00756 | 1000 | - | 15879702 | 15879718 | 0 | 1 | 16, | 0, |
| chr2L | 15879743 | 15879754 | PR00756 | 1000 | - | 15879743 | 15879754 | 0 | 1 | 11, | 0, |
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InterProScan (interproscan) Track Description
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Description
This track shows matches to protein signatures in the InterPro database that were identified by InterProScan. InterPro includes protein signatures from 14 member databases (see the "InterPro consortium member databases" page for details). InterProScan uses programs and analysis workflows optimized for each member database to perform the searches and filter the results.
RefSeq protein sequences from the D. melanogaster genome were obtained from NCBI, and analyzed by InterProScan. The matches to the protein signatures were projected to the corresponding RefSeq transcripts and the genomic sequences using the pslMap program developed by the UCSC Genome Browser Project Team.
References
Paysan-Lafosse T, et al. InterPro in 2022. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427.
Jones P, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014 May 1;30(9):1236-40.
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