Schema for InterProScan - InterPro Signatures Identified by InterProScan

Database: dm6 Primary Table: interproscan_Pfam Data last updated: 2023-10-14
Big Bed File: /gbdb/dm6/bbi/interproscan/dm6_interproscan_Pfam.bb
Item Count: 33,354
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15675981	Start position in chromosome
`chromEnd`	15676045	End position in chromosome
`name`	PF16007	Name of item.
`score`	1000	Score (0-1000)
`strand`	-	+ or - for strand
`thickStart`	15675981	Start of where display should be thick (start codon)
`thickEnd`	15676045	End of where display should be thick (stop codon)
`reserved`	0	Used as itemRgb as of 2004-11-22
`blockCount`	1	Number of blocks
`blockSizes`	64,	Comma separated list of block sizes
`chromStarts`	0,	Start positions relative to chromStart

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	blockCount	blockSizes	chromStarts
chr2L	15675981	15676045	PF16007	1000	-	15675981	15676045	1	64,	0,
chr2L	15730404	15730469	PF02984	1000	-	15730404	15730469	1	65,	0,
chr2L	15730520	15730649	PF00134	1000	-	15730520	15730649	1	129,	0,
chr2L	15730618	15730683	PF02984	1000	-	15730618	15730683	1	65,	0,
chr2L	15730624	15730689	PF02984	1000	-	15730624	15730689	1	65,	0,
chr2L	15730734	15737654	PF00134	1000	-	15730734	15737654	2	102,27,	0,6893,
chr2L	15730740	15737660	PF00134	1000	-	15730740	15737660	2	96,33,	0,6887,
chr2L	15750816	15750968	PF09782	1000	-	15750816	15750968	1	152,	0,
chr2L	15752509	15752658	PF00270	1000	+	15752509	15752658	1	149,	0,
chr2L	15752821	15752900	PF00271	1000	+	15752821	15752900	1	79,	0,

InterProScan (interproscan) Track Description


	Description This track shows matches to protein signatures in the InterPro database that were identified by InterProScan. InterPro includes protein signatures from 14 member databases (see the "InterPro consortium member databases" page for details). InterProScan uses programs and analysis workflows optimized for each member database to perform the searches and filter the results. RefSeq protein sequences from the D. melanogaster genome were obtained from NCBI, and analyzed by InterProScan. The matches to the protein signatures were projected to the corresponding RefSeq transcripts and the genomic sequences using the pslMap program developed by the UCSC Genome Browser Project Team. References Paysan-Lafosse T, et al. InterPro in 2022. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. Jones P, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014 May 1;30(9):1236-40.

Description

References