Schema for InterProScan - InterPro Signatures Identified by InterProScan

Database: dm6 Primary Table: interproscan_ProSitePatterns Data last updated: 2023-10-14
Big Bed File: /gbdb/dm6/bbi/interproscan/dm6_interproscan_ProSitePatterns.bb
Item Count: 9,649
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15730586	Start position in chromosome
`chromEnd`	15730618	End position in chromosome
`name`	PS00292	Name of item.
`score`	1000	Score (0-1000)
`strand`	-	+ or - for strand
`thickStart`	15730586	Start of where display should be thick (start codon)
`thickEnd`	15730618	End of where display should be thick (stop codon)
`reserved`	0	Used as itemRgb as of 2004-11-22
`blockCount`	1	Number of blocks
`blockSizes`	32,	Comma separated list of block sizes
`chromStarts`	0,	Start positions relative to chromStart

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	blockCount	blockSizes	chromStarts
chr2L	15730586	15730618	PS00292	1000	-	15730586	15730618	1	32,	0,
chr2L	15730800	15730832	PS00292	1000	-	15730800	15730832	1	32,	0,
chr2L	15730806	15737629	PS00292	1000	-	15730806	15737629	2	30,2,	0,6821,
chr2L	15760267	15760278	PS00941	1000	-	15760267	15760278	1	11,	0,
chr2L	15767737	15767759	PS00028	1000	-	15767737	15767759	1	22,	0,
chr2L	15767766	15767787	PS00028	1000	-	15767766	15767787	1	21,	0,
chr2L	15767794	15767815	PS00028	1000	-	15767794	15767815	1	21,	0,
chr2L	15767821	15767844	PS00028	1000	-	15767821	15767844	1	23,	0,
chr2L	15767849	15767870	PS00028	1000	-	15767849	15767870	1	21,	0,
chr2L	15767877	15767899	PS00028	1000	-	15767877	15767899	1	22,	0,

InterProScan (interproscan) Track Description


	Description This track shows matches to protein signatures in the InterPro database that were identified by InterProScan. InterPro includes protein signatures from 14 member databases (see the "InterPro consortium member databases" page for details). InterProScan uses programs and analysis workflows optimized for each member database to perform the searches and filter the results. RefSeq protein sequences from the D. melanogaster genome were obtained from NCBI, and analyzed by InterProScan. The matches to the protein signatures were projected to the corresponding RefSeq transcripts and the genomic sequences using the pslMap program developed by the UCSC Genome Browser Project Team. References Paysan-Lafosse T, et al. InterPro in 2022. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. Jones P, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014 May 1;30(9):1236-40.

Description

References