Schema for InterProScan - InterPro Signatures Identified by InterProScan

Database: dm6 Primary Table: interproscan_SFLD Data last updated: 2023-10-14
Big Bed File: /gbdb/dm6/bbi/interproscan/dm6_interproscan_SFLD.bb
Item Count: 243
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	4444909	Start position in chromosome
`chromEnd`	4445476	End position in chromosome
`name`	SFLDF00344	Name of item.
`score`	1000	Score (0-1000)
`strand`	+	+ or - for strand
`thickStart`	4444909	Start of where display should be thick (start codon)
`thickEnd`	4445476	End of where display should be thick (stop codon)
`reserved`	0	Used as itemRgb as of 2004-11-22
`blockCount`	2	Number of blocks
`blockSizes`	227,284,	Comma separated list of block sizes
`chromStarts`	0,283,	Start positions relative to chromStart

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	blockCount	blockSizes	chromStarts
chr2L	4444909	4445476	SFLDF00344	1000	+	4444909	4445476	2	227,284,	0,283,
chr2L	4444909	4445476	SFLDS00029	1000	+	4444909	4445476	2	227,284,	0,283,
chr2L	4455919	4456442	SFLDG01135	1000	-	4455919	4456442	2	156,57,	0,466,
chr2L	4455919	4456442	SFLDS00003	1000	-	4455919	4456442	2	156,57,	0,466,
chr2L	4456176	4456442	SFLDG01135	1000	-	4456176	4456442	2	156,57,	0,209,
chr2L	4456176	4456442	SFLDS00003	1000	-	4456176	4456442	2	156,57,	0,209,
chr2L	9504385	9515606	SFLDF00027	1000	+	9504385	9515606	3	428,181,42,	0,10928,11179,
chr2L	9504385	9515606	SFLDG00002	1000	+	9504385	9515606	3	428,181,42,	0,10928,11179,
chr2L	11119180	11119654	SFLDF00027	1000	-	11119180	11119654	1	474,	0,
chr2L	11119180	11119654	SFLDG00002	1000	-	11119180	11119654	1	474,	0,

InterProScan (interproscan) Track Description


	Description This track shows matches to protein signatures in the InterPro database that were identified by InterProScan. InterPro includes protein signatures from 14 member databases (see the "InterPro consortium member databases" page for details). InterProScan uses programs and analysis workflows optimized for each member database to perform the searches and filter the results. RefSeq protein sequences from the D. melanogaster genome were obtained from NCBI, and analyzed by InterProScan. The matches to the protein signatures were projected to the corresponding RefSeq transcripts and the genomic sequences using the pslMap program developed by the UCSC Genome Browser Project Team. References Paysan-Lafosse T, et al. InterPro in 2022. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. Jones P, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014 May 1;30(9):1236-40.

Description

References