Schema for TSS (Celniker) (R5) - Transcription Start Sites (Celniker Group) (R5)

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Database: dm6 Primary Table: celniker_tss Row Count: 22,337

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	7409	`int(10) unsigned`	range
`chromEnd`	7410	`int(10) unsigned`	range
`name`	TSS_CG11023_7410	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand
585	chr2L	7409	7410	TSS_CG11023_7410	+
585	chr2L	7438	7439	TSS_CG11023_7439	+
585	chr2L	18569	18570	TSS_l(2)gl_18570	-
585	chr2L	21375	21376	TSS_l(2)gl_21376	-
585	chr2L	21951	21952	TSS_CR43609_21952	+
585	chr2L	25154	25155	TSS_Ir21a_25155	-
585	chr2L	59267	59268	TSS_Cda5_59268	-
585	chr2L	65403	65404	TSS_Cda5_65404	-
585	chr2L	66583	66584	TSS_dbr_66584	+
585	chr2L	67027	67028	TSS_dbr_67028	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TSS (Celniker) (R5) (celniker_tss) Track Description


	Description This track shows the transcription start sites (TSS) in D. melanogaster that have been identified by the modENCODE Drosophila Transcriptome group. These TSS annotations are supported by CAGE or full-length cDNAs. Credits This dataset is available from the ENCODE FTP site. Hoskins RA. et al. Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Res. 2011 Feb;21(2):182-92.

Description