This track shows the locations of putative Transcription Start Sites (TSS) in the
D. melanogaster genome based on the analysis of RAMPAGE results from multiple developmental stages of D. melanogaster embryos.
The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the
accession number GSE89299. The RAMPAGE reads were mapped against the D. melanogaster (dm6) assembly using STAR. The putative promoter regions were identified by TSRchitect.
References
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21.