Zelda ChIP-Seq Track Settings

ChIP-Seq of Zelda Transcription Factor (All ChIP Seq Tracks)

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	hide Configure	ZLD Peaks (Cycles 8-9)	Zelda Peaks (Mitotic Cycles 8-9)	Schema
	hide Configure	ZLD logLR (Cycles 8-9)	Zelda Log Likelihood Enrichment (Mitotic Cycles 8-9)	Schema
	hide Configure	ZLD Peaks (Cycle 13)	Zelda Peaks (Mitotic Cycle 13)	Schema
	hide Configure	ZLD logLR (Cycle 13)	Zelda Log Likelihood Enrichment (Mitotic Cycle 13)	Schema
	hide Configure	ZLD Peaks (Cycle 14)	Zelda Peaks (Mitotic Cycles 14)	Schema
	hide Configure	ZLD logLR (Cycle 14)	Zelda Log Likelihood Enrichment (Mitotic Cycle 14)	Schema

Description

These tracks show the positions that are enriched in the transcription factor Zelda before (mitotic cycles 8-9), during (mitotic cycle 13), and after (mitotic cycle 14) the maternal-to-zygotic transition (MZT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2.

The datasets were obtained from the NCBI BioProject database under the accession number PRJNA144105.

Credits

Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB. Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition. PLoS Genet. 2011 Oct;7(10):e1002266.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.