MARs (Embryos) Track Settings

Matrix Attachment Regions (MARs) in 0-16 Hour Embryos (All Chromatin Domains tracks)

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	hide Configure	MAR Peaks	Matrix Attachment Region Peaks (Embryos)	Schema
	hide Configure	MAR logLR	Matrix Attachment Region Log Likelihood Enrichment (Embryos)	Schema

Description

These tracks show the putative Matrix Attachment Regions (MARs) in D. melanogaster 0-16 hours embryos. The MAR ABI SOLiD reads were mapped against the D. melanogaster genome using CUSHAW3. The MAR peak calls and the log likelihood ratio evidence tracks were produced by MACS.

The MAR sequencing reads were obtained from the NCBI Sequence Read Archive (SRA) under the accession number SRP035544.

References

Pathak RU, Srinivasan A, Mishra RK. Genome-wide mapping of matrix attachment regions in Drosophila melanogaster. BMC Genomics. 2014 Nov 25;15:1022.

Liu Y, Popp B, Schmidt B. CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding. PLoS One. 2014 Jan 22;9(1):e86869.