Pupal Wings ATAC-Seq Track Settings

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ATAC-Seq of Pupal Wings (All Expression and Regulation tracks)

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	hide Configure	ATAC-Seq logLR (0% Pupal Dev.)	Log Likelihood ATAC-Seq Enrichment for 0% Pupal Development	Schema
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Description

These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of D. melanogaster wings during different stages of pupal development. The peak calls and the log likelihood ratio evidence tracks were produced by MACS. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05.

Accession Numbers for ATAC-Seq Data

The ATAC-Seq data were obtained from NCBI using the following accession numbers:

BioProject: PRJNA923257
Sequence Read Archive: SRP417177

References

Ling L, Mühling B, Jaenichen R, Gompel N. Increased chromatin accessibility promotes the evolution of a transcriptional silencer in Drosophila. Sci Adv. 2023 Feb 17;9(7):eade6529.

Tarbell ED, Liu T. HMMRATAC: a Hidden Markov ModeleR for ATAC-seq. Nucleic Acids Res. 2019 Sep 19;47(16):e91.

Zhang Y, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.