Ovaries ATAC-Seq Track Settings
 
ATAC-Seq of Female Ovaries   (All Expression and Regulation tracks)

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Description

These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of D. melanogaster female ovaries. The peak calls and the log likelihood ratio evidence tracks were produced by MACS and HMMRATAC. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05.

Accession Numbers for ATAC-Seq Data

The ATAC-Seq data were obtained from NCBI using the following accession numbers:

References

van Lopik J, Alizada A, Trapotsi MA, Hannon GJ, Bornelöv S, Czech Nicholson B. Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus. Nat Commun. 2023 Nov 13;14(1):7337. doi: 10.1038/s41467-023-42787-1.

Tarbell ED, Liu T. HMMRATAC: a Hidden Markov ModeleR for ATAC-seq. Nucleic Acids Res. 2019 Sep 19;47(16):e91.

Zhang Y, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.