Description

This track shows the repeats identified by RepeatMasker using a combined Drosophila repeat library. The sequences in the combined repeat library were obtained from the following sources:

• Helentrons and HINE elements from Thomas J et al., 2014
• Species-specific ReAS repeat library from the Drosophila 12 Genomes Consortium
• Drosophila transposons in the RepBase library
• Species-specific LTRharvest repeat library
• Species-specific RepeatModeler repeat library
• Species-specific dnaPipeTE repeat library
• Species-specific Tedna repeat library

References

Drosophila 12 Genomes Consortium. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218 (8 November 2007)

Thomas J, Vadnagara K, Pritham EJ. DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons). Mob DNA. 2014 Jun 4;5:18.

Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-4.0. 2013-2015.