CIA Transcriptome (ORFanage) Track Settings

ORFanage Analysis of Combined Isoform Assembly (CIA) Transcriptome (All RNA Seq Tracks)

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	hide Configure	ORFanage Coding Regions	Coding Regions Predicted by ORFanage	Schema
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Description

These evidence tracks show the results of the ORFanage analysis of the Combined Isoform Assembly (CIA) transcriptome produced by the Hilgers lab. The open reading frames within the CIA transcripts were predicted by ORFanage using release 6.61 of the gene annotations for D. melanogaster produced by FlyBase as reference.

References

Alfonso-Gonzalez C, et al. Sites of transcription initiation drive mRNA isoform selection. Cell. 2023 May 25;186(11):2438-2455.e22. doi: 10.1016/j.cell.2023.04.012.

Varabyou A, Erdogdu B, Salzberg SL, Pertea M. Investigating Open Reading Frames in Known and Novel Transcripts using ORFanage. Nat Comput Sci. 2023 Aug;3(8):700-708. doi: 10.1038/s43588-023-00496-1.