dbVar Track Settings
 
Structural Variations in dbVar   (All Variations tracks)

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 All Type Variant Calls  Variant Regions 
Study
nstd25 
nstd26 
estd205 
nstd134 
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 Configure 		 nstd25 Variant Calls (R5)  nstd25 Variant Calls (Dopman et al. 2007) (R5)   Schema 
 
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 Configure 		 nstd25 Variant Regions (R5)  nstd25 Variant Regions (Dopman et al. 2007) (R5)   Schema 
 
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 Configure 		 nstd26 Variant Calls (R4)  nstd26 Variant Calls (Emerson et al. 2008) (R4)   Schema 
 
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 Configure 		 nstd26 Variant Regions (R4)  nstd26 Variant Regions (Emerson et al. 2008) (R4)   Schema 
 
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 Configure 		 estd205 Variant Calls (R5)  estd205 Variant Calls (Zichner et al. 2012) (R5)   Schema 
 
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 Configure 		 estd205 Variant Regions (R5)  estd205 Variant Regions (Zichner et al. 2012) (R5)   Schema 
 
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 Configure 		 nstd134 Variant Calls  nstd134 Variant Calls (Gilks et al. 2016)   Schema 
 
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 Configure 		 nstd134 Variant Regions  nstd134 Variant Regions (Gilks et al. 2016)   Schema 
    

Description

These tracks show the locations of large structural variations in the D. melanogaster genome from the NCBI dbVar database. The datasets were obtained from the NCBI FTP site, and they include the results from the following studies:

AccessionManuscript
nstd25 Dopman EB, Hartl DL. A portrait of copy-number polymorphism in Drosophila melanogaster. Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19920-5.
nstd26 Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M. Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science. 2008 Jun 20;320(5883):1629-31.
estd205 Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO. Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing. Genome Res. 2013 Mar;23(3):568-79.
nstd134 Gilks WP, Pennell TM, Flis I, Webster MT, Morrow EH. Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample. Version 3. F1000Res. 2016 Nov 7 [revised 2016 Dec 22];5:2644.

References

Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M, Zhou G, Paschall J, Ananiev V, Flicek P, Church DM. DbVar and DGVa: public archives for genomic structural variation. Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.