Description
These tracks show the positions of DNase I Hypersensitive Sites (DHS). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2.
The DHS datasets were obtained from the Sequence Read Archive at NCBI under the following accession numbers:
| Accession | Developmental Stages / Cell Lines | Reference |
| SRP010823 |
S2 |
Kharchenko PV et al., 2011 |
| SRP005657 |
Kc167 |
Kharchenko PV et al., 2011 |
| SRP002474 |
Embryonic Stages 5, 9, 10, 11, 14 |
Thomas S et al., 2011 |
| SRP015758 |
S2, OSC |
Arnold CD et al., 2013 |
| SRP112733 |
Wild-type, Elav+, Mef2+ 6-8hr Embryonic Nuclei |
Cusanovich DA et al., 2018 |
References
Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.
Nature. 2011 Mar 24;471(7339):480-5.
Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, Canfield TK, Giste E, Fisher W, Hammonds A, Celniker SE, Biggin MD, Stamatoyannopoulos JA.
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development.
Genome Biol. 2011;12(5):R43.
Arnold CD, Gerlach D, Stelzer C, Boryń ŁM, Rath M, Stark A.
Genome-wide quantitative enhancer activity maps identified by STARR-seq.
Science. 2013 Mar 1;339(6123):1074-7.
Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM.
The cis-regulatory dynamics of embryonic development at single-cell resolution.
Nature. 2018 Mar 22;555(7697):538-542.
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS.
Model-based analysis of ChIP-Seq (MACS).
Genome Biol. 2008;9(9):R137.
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