Description
This track displays simple tandem repeats (possibly imperfect repeats) on
the 25 Sep 2023 Passerculus sandwichensis/GCA_031885435.1_bPasSan2.pri/GCA_031885435.1 genome assembly,
located by Tandem Repeats
Finder (TRF) which is specialized for this purpose. These repeats can
occur within coding regions of genes and may be quite
polymorphic. Repeat expansions are sometimes associated with specific
diseases.
There are 681,402 items in the track covering 117,901,034 bases,
assembly size 1,270,940,266 bases, percent coverage % 9.28.
Methods
For more information about the TRF program, see Benson (1999).
Credits
TRF was written by
Gary Benson.
References
Benson G.
Tandem repeats finder: a program to analyze DNA sequences.
Nucleic Acids Res. 1999 Jan 15;27(2):573-80.
PMID: 9862982; PMC: PMC148217
Credits
This track was generated using a modification of a program developed by G. Miklem and L. Hillier
(unpublished).
References
Gardiner-Garden M, Frommer M.
CpG islands in vertebrate genomes.
J Mol Biol. 1987 Jul 20;196(2):261-82.
PMID: 3656447
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