Architectural Proteins ChIP-Seq (S2) Track Settings

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ChIP-Seq of Architectural Proteins in S2 Cells (All ChIP Seq Tracks)

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	hide Configure	Cp190 MACS2	Cp190 MACS2 Peaks for S2 Cells	Schema
	hide Configure	Cp190 Peakzilla	Cp190 Peakzilla Peaks for S2 Cells	Schema
	hide Configure	Cp190 logLR	Cp190 Log Likelihood Enrichment for S2 Cells	Schema
	hide Configure	Ibf1 MACS2	Ibf1 MACS2 Peaks for S2 Cells	Schema
	hide Configure	Ibf1 Peakzilla	Ibf1 Peakzilla Peaks for S2 Cells	Schema
	hide Configure	Ibf1 logLR	Ibf1 Log Likelihood Enrichment for S2 Cells	Schema
	hide Configure	Ibf2 MACS2	Ibf2 MACS2 Peaks for S2 Cells	Schema
	hide Configure	Ibf2 Peakzilla	Ibf2 Peakzilla Peaks for S2 Cells	Schema
	hide Configure	Ibf2 logLR	Ibf2 Log Likelihood Enrichment for S2 Cells	Schema
	hide Configure	pita MACS2	pita MACS2 Peaks for S2 Cells	Schema
	hide Configure	pita Peakzilla	pita Peakzilla Peaks for S2 Cells	Schema
	hide Configure	pita logLR	pita Log Likelihood Enrichment for S2 Cells	Schema
	hide Configure	ZIPIC MACS2	ZIPIC MACS2 Peaks for S2 Cells	Schema
	hide Configure	ZIPIC Peakzilla	ZIPIC Peakzilla Peaks for S2 Cells	Schema
	hide Configure	ZIPIC logLR	ZIPIC Log Likelihood Enrichment for S2 Cells	Schema

Description

These tracks show the results of the ChIP-Seq analyses of architectural proteins (also known as insulators) from S2 cells. The regions that are enriched in the architectural proteins were identified by MACS2 and Peakzilla. The log likelihood ratio evidence tracks were produced by MACS2.

The ChIP-Seq datasets were obtained from the Gene Expression Omnibus database at NCBI under the following accession numbers:

Accession	Insulators	Reference
GSE46614	Cp190, Ibf1, Ibf2	Cuartero S et al., EMBO J. 2014
GSE54337	pita, ZIPIC	Maksimenko O et al., Genome Res. 2015

References

Maksimenko O, Bartkuhn M, Stakhov V, Herold M, Zolotarev N, Jox T, Buxa MK, Kirsch R, Bonchuk A, Fedotova A, Kyrchanova O, Renkawitz R, Georgiev P. Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin. Genome Res. 2015 Jan;25(1):89-99.

Cuartero S, Fresán U, Reina O, Planet E, Espinàs ML. Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function. EMBO J. 2014 Mar 18;33(6):637-47.

Bardet AF, Steinmann J, Bafna S, Knoblich JA, Zeitlinger J, Stark A. Identification of transcription factor binding sites from ChIP-seq data at high resolution. Bioinformatics. 2013 Nov 1;29(21):2705-13.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.