Inverted Repeats Track Settings
 
Inverted Repeats Identified by Inverted Repeats Finder   (All Repeats tracks)

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Minimum Score (0-1000):


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Data last updated at UCSC: 2016-01-23 19:35:55

Description

Inverted repeats within each scaffold of the D. melanogaster genome is identified using Inverted Repeats Finder with the following parameters:

  • Match: 2
  • Mismatch: 3
  • Delta: 5
  • Match Probability: 80
  • Indel Probability: 10
  • Min Score: 40
  • Max Length: 10000
  • Max Loop: 50000
  • t4: 74
  • t5: 493
  • t7: 50000

References

P. E. Warburton, J. Giordano, F. Cheung, Y. Gelfand and G. Benson. Inverted Repeat Structure of the Human Genome: The X-Chromosome Contains a Preponderance of Large, Highly Homologous Inverted Repeats That Contain Testes Genes. Genome Research, 14:1861-1869, 2004.