Description

This track shows the transcripts assembled by Scallop-LR using Full-Length Non-Chimeric (FLNC) PacBio Iso-Seq reads. The alignments of the FLNC PacBio Iso-Seq reads were produced using minimap2.

The PacBio Iso-Seq data were produced by Chinmay P. Rele from the Reed Lab at The University of Alabama.

References

Li H. New strategies to improve minimap2 alignment accuracy. Bioinformatics. 2021 Oct 8;37(23):4572-4.

Tung LH, Shao M, Kingsford C. Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads. Genome Biol. 2019 Dec 18;20(1):287.