StringTie2 Iso-Seq Transcripts Track Settings

Transcripts Assembled by StringTie2 Using PacBio Iso-Seq Reads (All PacBio Iso-Seq Tracks)

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Data last updated at UCSC: 2022-10-24 22:50:20

Description

This track shows the transcripts assembled by StringTie2 using Full-Length Non-Chimeric (FLNC) PacBio Iso-Seq reads. The alignments of the FLNC PacBio Iso-Seq reads were produced using minimap2.

The PacBio Iso-Seq data were produced by Chinmay P. Rele from the Reed Lab at The University of Alabama.

References

Li H. New strategies to improve minimap2 alignment accuracy. Bioinformatics. 2021 Oct 8;37(23):4572-4.

Kovaka S, Zimin AV, Pertea GM, Razaghi R, Salzberg SL, Pertea M. Transcriptome assembly from long-read RNA-seq alignments with StringTie2. Genome Biol. 2019 Dec 16;20(1):278.