Drosophila 2-Split Alignments Track Settings
 
LAST 2-Split, Post-Masked Alignments of Drosophila Genomes   (All Comparative Genomics tracks)

Display mode:       Reset to defaults
All subtracks:
List subtracks: only selected/visible    all    ()  
hide
 Configure 		 D. equinoxialis  Drosophila equinoxialis (ASM1815034v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. paulistorum  Drosophila paulistorum (ASM1815213v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. tropicalis  Drosophila tropicalis (ASM1815108v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. insularis  Drosophila insularis (ASM1890393v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. sturtevanti  Drosophila sturtevanti (ASM1815037v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. neocordata  Drosophila neocordata (ASM1890361v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. saltans  Drosophila saltans (ASM1890357v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. prosaltans  Drosophila prosaltans (ASM1815127v1) LAST 2-Split Alignments   Schema 
hide
 Configure 		 D. melanogaster  Drosophila melanogaster (dm6) LAST 2-Split Alignments   Schema 
    

Description

This track shows the split-alignments between nine Drosophila genome assemblies and Drosophila willistoni produced by LAST.

Methods

The whole genome alignments were produced using LAST, and then processed by the last-split and last-postmask programs to identify orthologous regions between the nine Drosophila genomes and the D. willistoni genome assembly. The split alignments are then converted into the bigChain format using the utilities developed by the UCSC Genome Bioinformatics Group.

References

Frith MC, Kawaguchi R. Split-alignment of genomes finds orthologies more accurately. Genome Biol. 2015 May 21;16(1):106. doi: 10.1186/s13059-015-0670-9.