modENCODE RNA-Seq (Cell Lines) Track Settings

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modENCODE RNA-Seq for Different Cell Lines (All Updated Transcriptome Tracks)

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	hide Configure	S2 (Plus)	RNA-seq for Schneider Line 2 S2-DRSC Cells (Plus)	Schema
	hide Configure	S2 (Minus)	RNA-seq for Schneider Line 2 S2-DRSC Cells (Minus)	Schema
	hide Configure	S2R+ (Plus)	RNA-seq for Schneider Line 2 S2R+ Cells (Plus)	Schema
	hide Configure	S2R+ (Minus)	RNA-seq for Schneider Line 2 S2R+ Cells (Minus)	Schema
	hide Configure	Sg4 (Plus)	RNA-seq for Schneider Line 2 Sg4 Cells (Plus)	Schema
	hide Configure	Sg4 (Minus)	RNA-seq for Schneider Line 2 Sg4 Cells (Minus)	Schema
	hide Configure	1182-4H (Plus)	RNA-seq for Embryonic 1182-4H Cells (Plus)	Schema
	hide Configure	1182-4H (Minus)	RNA-seq for Embryonic 1182-4H Cells (Minus)	Schema
	hide Configure	GM2 (Plus)	RNA-seq for Embryonic GM2 Cells (Plus)	Schema
	hide Configure	GM2 (Minus)	RNA-seq for Embryonic GM2 Cells (Minus)	Schema
	hide Configure	Kc167, ENCSR788YTN (Plus)	RNA-seq for Embryonic Kc167 Cells, ENCSR788YTN (Plus)	Schema
	hide Configure	Kc167, ENCSR788YTN (Minus)	RNA-seq for Embryonic Kc167 Cells, ENCSR788YTN (Minus)	Schema
	hide Configure	Kc167, ENCSR992GOY (Plus)	RNA-seq for Embryonic Kc167 Cells, ENCSR992GOY (Plus)	Schema
	hide Configure	Kc167, ENCSR992GOY (Minus)	RNA-seq for Embryonic Kc167 Cells, ENCSR992GOY (Minus)	Schema
	hide Configure	S1 (Plus)	RNA-seq for Embryonic S1 Cells (Plus)	Schema
	hide Configure	S1 (Minus)	RNA-seq for Embryonic S1 Cells (Minus)	Schema
	hide Configure	S3 (Plus)	RNA-seq for Embryonic S3 Cells (Plus)	Schema
	hide Configure	S3 (Minus)	RNA-seq for Embryonic S3 Cells (Minus)	Schema
	hide Configure	CME-L1 (Plus)	RNA-seq for Leg Disc CME-L1 Cells (Plus)	Schema
	hide Configure	CME-L1 (Minus)	RNA-seq for Leg Disc CME-L1 Cells (Minus)	Schema
	hide Configure	CME-W1-Cl.8+ (Plus)	RNA-seq for Wing Disc CME-W1-Cl.8+ Cells (Plus)	Schema
	hide Configure	CME-W1-Cl.8+ (Minus)	RNA-seq for Wing Disc CME-W1-Cl.8+ Cells (Minus)	Schema
	hide Configure	CME-W2 (Plus)	RNA-seq for Wing Disc CME-W2 Cells (Plus)	Schema
	hide Configure	CME-W2 (Minus)	RNA-seq for Wing Disc CME-W2 Cells (Minus)	Schema
	hide Configure	ML-DmD8 (Plus)	RNA-seq for Wing Disc ML-DmD8 Cells (Plus)	Schema
	hide Configure	ML-DmD8 (Minus)	RNA-seq for Wing Disc ML-DmD8 Cells (Minus)	Schema
	hide Configure	ML-DmD9 (Plus)	RNA-seq for Wing Disc ML-DmD9 Cells (Plus)	Schema
	hide Configure	ML-DmD9 (Minus)	RNA-seq for Wing Disc ML-DmD9 Cells (Minus)	Schema
	hide Configure	ML-DmD16-c3 (Plus)	RNA-seq for Wing Disc ML-DmD16-c3 Cells (Plus)	Schema
	hide Configure	ML-DmD16-c3 (Minus)	RNA-seq for Wing Disc ML-DmD16-c3 Cells (Minus)	Schema
	hide Configure	ML-DmD21 (Plus)	RNA-seq for Wing Disc ML-DmD21 Cells (Plus)	Schema
	hide Configure	ML-DmD21 (Minus)	RNA-seq for Wing Disc ML-DmD21 Cells (Minus)	Schema
	hide Configure	ML-DmD32 (Plus)	RNA-seq for Wing Disc ML-DmD32 Cells (Plus)	Schema
	hide Configure	ML-DmD32 (Minus)	RNA-seq for Wing Disc ML-DmD32 Cells (Minus)	Schema
	hide Configure	ML-DmD17-c3 (Plus)	RNA-seq for Haltere Disc ML-DmD17-c3 Cells (Plus)	Schema
	hide Configure	ML-DmD17-c3 (Minus)	RNA-seq for Haltere Disc ML-DmD17-c3 Cells (Minus)	Schema
	hide Configure	ML-DmD11 (Plus)	RNA-seq for Eye-antennal Disc ML-DmD11 Cells (Plus)	Schema
	hide Configure	ML-DmD11 (Minus)	RNA-seq for Eye-antennal Disc ML-DmD11 Cells (Minus)	Schema
	hide Configure	ML-DmD20-c2 (Plus)	RNA-seq for Antennal Disc ML-DmD20-c2 Cells (Plus)	Schema
	hide Configure	ML-DmD20-c2 (Minus)	RNA-seq for Antennal Disc ML-DmD20-c2 Cells (Minus)	Schema
	hide Configure	ML-DmD20-c5 (Plus)	RNA-seq for Antennal Disc ML-DmD20-c5 Cells (Plus)	Schema
	hide Configure	ML-DmD20-c5 (Minus)	RNA-seq for Antennal Disc ML-DmD20-c5 Cells (Minus)	Schema
	hide Configure	ML-DmD4-c1 (Plus)	RNA-seq for Mixed Discs ML-DmD4-c1 Cells (Plus)	Schema
	hide Configure	ML-DmD4-c1 (Minus)	RNA-seq for Mixed Discs ML-DmD4-c1 Cells (Minus)	Schema
	hide Configure	ML-DmBG1-c1 (Plus)	RNA-seq for CNS ML-DmBG1-c1 Cells (Plus)	Schema
	hide Configure	ML-DmBG1-c1 (Minus)	RNA-seq for CNS ML-DmBG1-c1 Cells (Minus)	Schema
	hide Configure	ML-DmBG2-c2 (Plus)	RNA-seq for CNS ML-DmBG2-c2 Cells (Plus)	Schema
	hide Configure	ML-DmBG2-c2 (Minus)	RNA-seq for CNS ML-DmBG2-c2 Cells (Minus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR286PNP (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR286PNP (Plus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR286PNP (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR286PNP (Minus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR359XXD (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR359XXD (Plus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR359XXD (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR359XXD (Minus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR792UNG (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR792UNG (Plus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR792UNG (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR792UNG (Minus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR934ILF (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR934ILF (Plus)	Schema
	hide Configure	ML-DmBG3-c2, ENCSR934ILF (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR934ILF (Minus)	Schema
	hide Configure	mbn2 (Plus)	RNA-seq for Tumorous Blood Cells mbn2 (Plus)	Schema
	hide Configure	mbn2 (Minus)	RNA-seq for Tumorous Blood Cells mbn2 (Minus)	Schema
	hide Configure	Kc167 20E, 5hr ENCSR446OGX (Plus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR446OGX (Plus)	Schema
	hide Configure	Kc167 20E, 5hr ENCSR446OGX (Minus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR446OGX (Minus)	Schema
	hide Configure	Kc167 20E, 5hr ENCSR805DDP (Plus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR805DDP (Plus)	Schema
	hide Configure	Kc167 20E, 5hr ENCSR805DDP (Minus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR805DDP (Minus)	Schema
	hide Configure	Kc167 20E, 24hr ENCSR001HIY (Plus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR001HIY (Plus)	Schema
	hide Configure	Kc167 20E, 24hr ENCSR001HIY (Minus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR001HIY (Minus)	Schema
	hide Configure	Kc167 20E, 24hr ENCSR640OHN (Plus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR640OHN (Plus)	Schema
	hide Configure	Kc167 20E, 24hr ENCSR640OHN (Minus)	RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR640OHN (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 1hr (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 1 hour (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 1hr (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 1 hour (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 3hr (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 3 hours (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 3hr (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 3 hours (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 5hr ENCSR487AIE (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR487AIE (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 5hr ENCSR487AIE (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR487AIE (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 5hr ENCSR920VFJ (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR920VFJ (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 5hr ENCSR920VFJ (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR920VFJ (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 5hr ENCSR997UBG (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR997UBG (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 5hr ENCSR997UBG (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR997UBG (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 7hr (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 7 hours (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 7hr (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 7 hours (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 24hr ENCSR678AJX (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR678AJX (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 24hr ENCSR678AJX (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR678AJX (Minus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 24hr ENCSR684IZZ (Plus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR684IZZ (Plus)	Schema
	hide Configure	ML-DmBG3-c2, 20E 24hr ENCSR684IZZ (Minus)	RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR684IZZ (Minus)	Schema

Description

These tracks show the strand-specific RNA-Seq coverage for different D. melanogaster cell lines. The RNA-Seq read coverage was normalized by a wigsum of 100,000,000 (1 million 100bp reads) using the bam2wig.py program in RSeQC.

The RNA-Seq reads were obtained from the ENCODE data portal at UCSC on August 2019, and then mapped against the D. melanogaster dm6 genome assembly using HISAT2. For each stage of development, results from multiple replicates were combined into a single RNA-Seq read coverage track.

References

Cherbas L, et al. The transcriptional diversity of 25 Drosophila cell lines.. Genome Res. 2011 Feb;21(2):301-14.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015 Apr;12(4):357-60.

Wang L, Wang S, Li W. RSeQC: quality control of RNA-seq experiments. Bioinformatics. 2012 Aug 15;28(16):2184-5.