Repeat Density Track Settings
 
Repeat Density (1kb window, 0.5kb overlap)   (All Variation and Repeats tracks)

Display mode:       Reset to defaults

Type of graph:
Track height: pixels (range: 12 to 100)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 1)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
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 Configure 		 ReAS Density  ReAS Repeat Density (1kb window, 0.5kb overlap)   Schema 
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 Configure 		 RepBase Density  RepBase Repeat Density (1kb window, 0.5kb overlap)   Schema 
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 Configure 		 RepeatModeler Density  RepeatModeler Repeat Density (1kb window, 0.5kb overlap)   Schema 
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 Configure 		 BLASTN | RECON | MAP Density  BLASTN | RECON | MAP Repeat Density (1kb window, 0.5kb overlap)   Schema 
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 Configure 		 Combined Repeats Density  Combined Repeats Repeat Density (1kb window, 0.5kb overlap)   Schema 
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 Configure 		 DCBLAST | Grouper | MAP Density  DCBLAST | Grouper | MAP Repeats Repeat Density (1kb window, 0.5kb overlap)   Schema 
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 Configure 		 PALS | PILER-DF | MUSCLE Density  PALS | PILER-DF | MUSCLE Repeat Density (1kb window, 0.5kb overlap)   Schema 
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 Configure 		 Tallymer | CD-HIT Density  Tallymer | CD-HIT Repeat Density (1kb window, 0.5kb overlap)   Schema 
    

Description

This track shows the density of transposon fragments identified by RepeatMasker using different repeat libraries with a 1kb window and a 500bp step size.

References

Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. http://www.repeatmasker.org. 1996-2010.