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Configure Tracks on UCSC Genome Browser: human T2T-CHM13 v2.0 (GCA_009914755.4)
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-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
CHM13 unique CHM13 unique in comparison to GRCh38/hg38 and GRCh37/hg19
rDNA models Consensus rDNA models
Assembly Assembly from NCBI Genbank Sequences
CenSat Annotation Centromeric Satellite Annotation
GC Percent GC Percent in 5-Base Windows
Human liftOver LiftOver alignments from CHM13 to hg19/hg38 and HG002 with two different pipelines
p13 jk lift hg38 all lifts of all hg38 sequences including haplotypes with testLiftRechainer
Microsatellites Microsatellite repeats
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
CAT/Liftoff Genes CAT + Liftoff Gene Annotations
NCBI RefSeq RefSeq gene predictions from NCBI
-   mRNA and EST    
CHM13 PROseq CHM13 PROseq stranded with unique genome-wide kmer filtering
CHM13 RNA-Seq CHM13 RNA-Seq (paired-end) unique genome-wide kmer filtering (unstranded)
RefSeq mRNAs RefSeq mRNAs mapped to this assembly
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
T2T Encode T2T Encode Reanalysis
-   Comparative Genomics    
Human Chain/Net Chain and Net alignments to target sequence: GCA_009914755.4_T2T-CHM13v2.0
-   Variation and Repeats    
ClinVar Variants ClinVar Variants 20220313 (lifted)
dbSNP 155 dbSNP 155 (lifted)
GWAS Variants GWAS Variants 2022-03-08 (lifted)
RepeatMasker RepeatMasker Repetitive Elements
SEDEF Segmental Dups SEDEF Segmental Duplications
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust
SGDP copy number SGDP copy number estimates
SGDP copy number subset SGDP copy number estimates subset