Control track and group visibility more selectively below.
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Gap |
| Gap Locations |
| GC Percent |
| GC Percent in 5-Base Windows |
| Assembly |
| Assembly from Fragments |
| CpG Islands |
| CpG Islands Identified by newcpgreport |
| INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
| RefSeq Acc |
| RefSeq Accession |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
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| RefSeq Genes |
| NCBI RefSeq Genes |
| D. mel Transcripts |
| BLAT Alignment of D. melanogaster Transcripts |
| D. mel Proteins |
| Spaln Alignment of D. melanogaster Proteins |
| genBlastG Genes |
| genBlastG Gene Predictions |
| GeMoMa Genes |
| GeMoMa Gene Predictions with RNA-Seq |
| Drosophila RefSeq Transcripts |
| BLAT Alignment of Drosophila RefSeq Transcripts |
| Potential Frame Shifts |
| Potential Frame Shifts Detected by SPALN2 |
| CDS Mapping |
| TBLASTN Mapping of D. melanogaster CDS |
| Genscan Genes |
| Genscan Gene Predictions |
| Geneid Genes |
| Geneid Gene Predictions |
| N-SCAN |
| N-SCAN Gene Predictions |
| N-SCAN PASA-EST |
| N-SCAN PASA-EST Gene Predictions |
| Augustus |
| Augustus Gene Predictions |
| Augustus (Protein Hints) |
| Augustus Gene Predictions (D. melanogaster Proteins Hints) |
| GlimmerHMM |
| GlimmerHMM Gene Predictions |
| InterProScan |
| InterPro Signatures Identified by InterProScan |
| tRNA Genes |
| Transfer RNA Genes Identified by tRNAscan-SE 2.0 |
| rRNA Genes |
| Ribosomal RNA Genes Identified by RNAmmer |
| Pfam Conserved Domains |
| Similarity to Pfam Conserved Domains Identified by RPS-BLAST |
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| Combined Splice Junctions |
| Combined Splice Junctions for Multiple Developmental Stages |
| Aggregated RNA-Seq Coverage |
| Aggregated RNA-Seq Coverage |
| RNA-Seq Coverage (Stages) |
| RNA-Seq Coverage for Different Developmental Stages |
| TransDecoder Transcripts |
| Transcripts and Coding Regions Predicted by TransDecoder |
| Trinity Transcripts |
| Transcripts Assembled by Genome-Guided Trinity |
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| D. melanogaster Chain |
| D. melanogaster (Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)) Chained Alignments |
| D. melanogaster Net |
| D. melanogaster (Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)) Alignment Net |
| D. hydei DhydGB1 Chain |
| D. hydei (Nov. 2017 (UC Davis ASM278046v1/DhydGB1)) Chained Alignments |
| D. hydei DhydGB1 Net |
| D. hydei (Nov. 2017 (UC Davis ASM278046v1/DhydGB1)) Alignment Net |
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| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
| WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
| RepeatMasker |
| Repeating Elements by RepeatMasker |
| TE Density |
| RepeatMasker Transposon Density (1kb window, 100bp step size) |
| TANTAN |
| Simple Repeats Identified by TANTAN |
| TANTAN Tandem |
| Tandem Repeats Identified by TANTAN |
| RepeatModeler |
| Transposons Identified by RepeatModeler |
| TransposonPSI (Pfam) |
| Pfam Transposon Protein Domains Identified by TransposonPSI |
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