UCSC Genome Browser on D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)
move zoom in zoom out
chr4:307,000-312,000 5,001 bp.
move start
  Click on a feature for details. Click+shift+drag to zoom in. Click side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts.   move end
  
Use drop-down controls below and press refresh to alter tracks displayed.
Tracks with lots of items will automatically be displayed in more compact modes.
-   Principal Splice Isoforms APPRIS
Principal Isoforms
Protein domains
Functional Residues
3D Structure
Species Conserv
TMHelices
Signal Peptide
-   Mapping and Sequencing Tracks
Base Position
Chromosome Band
Gap
GC Percent
Assembly
INSDC
RefSeq Acc
Restr Enzymes
Short Match
Melting Temp.
RNASlider MFE
-   Transgenic Insertions
1M-8M Screens (R5)
9M Screen (R5)
GAA Screen
Chr4 Constructs
Landing Pad Lines (R5)
MiMIC Lines
-   Chromatin Domains
Het. Domains (R5)
BG3 9-state (R5)
S2 9-state (R5)
BG3 30-state (R5)
S2 30-state (R5)
Kc 5-state (R5)
hiHMM Models (R5)
S2 Zhou 30-state (R5)
LAD (R5)
Hi-C Domains (Embryos) (R5)
Topological Boundaries (R5)
TAD Boundaries (Nuc. Cycle 14)
HiCseg Domains (Kc167) (R5)
MARs (Embryos)
Polytene TADs (R5)
GCSDI Models (R5)
-   Genes and Gene Prediction Tracks
FlyBase Genes
FlyBase Exons
FlyBase CDS
FlyBase Pseudogenes
FlyBase Non-coding
Drosophila RefSeq Transcripts
piRNA Clusters (R5)
Pfam in RefSeq
UniProt
InterProScan
FlyBase 6.06 Genes
FlyBase 6.06 Proteins
FlyBase 6.06 Exons
FlyBase 6.06 CDS
FlyBase 6.06 Pseudogenes
FlyBase 6.06 Non-coding
-   ChIP Seq Tracks
Phantom Peaks (R5)
modENCODE Histones ChIP-Seq
PePr Histone Modifications Peaks
MUSIC Histone Modifications Peaks
Genome Mappability
modENCODE PolII ChIP-Seq
MUSIC PolII ChIP-Seq Peaks
PolII ChIP-Seq (Cell Lines)
RNA PolII X-ChIP-Seq
Inhibit Topoisomerases PolII ChIP-Seq
Basal Transcription Factors ChIP-Seq
GAF KD Differential Regions
Basal Transcription Factors ChIP-exo
ORGANIC Enrichment (S2 Cells)
Architectural Proteins ChIP-Seq (Kc167)
Architectural Proteins ChIP-Seq (S2)
Heat Shock Proteins ChIP-Seq (S2)
TF ChIP-nexus
ChIP-Seq MBT Embryos
CLAMP ChIP-Seq
Henriques 2018 ChIP-Seq
Zelda ChIP-Seq
Su(H) ChIP-Seq
Histone Variants ChIP-Seq (S2)
R-Loop DRIP-Seq (S2)
modENCODE Histone Modifications (R5)
modENCODE Chromosomal Proteins (R5)
modERN TF Peaks
+   ChIP-chip Tracks
-   Wolbachia Tracks
wAna Alignments
wRi Alignments
wMel Alignments
Wolbachia Proteins
+   Expression and Regulation
-   MNase Tracks
MNase Accessibility (R5)
GAF RNAi MNase
GAF vs. LacZ RNAi MNase
NELF RNAi MNase
NELF RNAi vs. Mock MNase
MBT Embryos MNase
+   RNA Seq Tracks
+   Comparative Genomics
+   Variations
-   Repeats
Natural TE
Interrupted Rpts
Microsatellite
Simple Repeats
WM + SDust
RepeatMasker
TE Density
Combined Library
TransposonPSI
TANTAN
Tallymer
RepeatDetector
Inverted Repeats
-   Updated Transcriptome Tracks
Combined modENCODE RNA-Seq (Development)
Combined Splice Junctions (Development)
modENCODE RNA-Seq (Development)
Combined modENCODE RNA-Seq (Tissues)
Combined Splice Junctions (Tissues)
modENCODE RNA-Seq (Tissues)
Combined modENCODE RNA-Seq (Cell Lines)
Combined Splice Junctions (Cell Lines)
modENCODE RNA-Seq (Cell Lines)
Combined RAMPAGE Embryos TSS
TSRchitect RAMPAGE Embryos TSS
TSRchitect Combined RAMPAGE TSS (Replicate 1)
TSRchitect RAMPAGE TSS Read Density (Replicate 1)
TSRchitect Combined RAMPAGE TSS (Replicate 2)
TSRchitect RAMPAGE TSS Read Density (Replicate 2)
       
Invisible link